Our laboratory has developed a number of software tools, including:
| GobyWeb: a web front-end that leverages Goby and simplifies next-generation sequencing data analysis. Supports data sharing and parallel computations on grids of computers. |
| Goby: high-performance next-gen data management framework. |
 | BDVal: Program for biomarker model development and validation in high-throughput datasets. |
| GPCR-OKB: The G Protein-Coupled Receptor Oligomerization Knowledge Base. |
| TEPSS: Tissue Expression Profile Similarity Searches. Find transcripts that have similar tissue expression profiles to a group of transcripts of interest. |
| Twease: Biomedical search engine (Twease/Medline searching abstracts from the Medline database and Twease/OTMI searching an OTMI text corpus). |
| SigPath: an information system designed to support quantitative studies on the signaling pathways and networks of the cell. |
| TissueInfo: information management and mining of EST data for cancer biomarker discovery. |
| RbDe: The Residue-based Diagram Editor is a web user interface that supports the construction of 2D diagrams of proteins. |
| RbDg: The Residue-based Diagram Generator is a batch version of RbDe. RbDg is used by many bioinformatics databases to create snake-like and other diagrams. |
