The latest version is goby_latest and requires Sun Java 1.6+. Python and C/C++ libraries are provided, see below.

Binary Distribution

• goby_latest-goby.zip – Complete Java binary distribution [see Change Log for what's new in the latest Goby release]
• You may also want to download our release of BWA with Goby support.

Source Distribution

• goby_latest-src.zip – Source distribution (Java, C/C++, Python)
• goby_latest-cpp.zip – C/C++ API for compiling aligners with native Goby support
• goby_latest-data.zip – Goby sample datasets
• goby_latest-deps.zip – External libraries required for compilation
• goby_latest-apidoc.zip – API documentation (for developers)
• goby_latest-api.jar – Java API (for reuse in other Java projects)

C/C++ API

The C/C++ APIs  support reading and writing Goby file formats for use with Goby next-gen data management framework. They have been used to develop native Goby support in BWA and GSNAP. Follow these detailed instructions to download and install on your machine.  The current C and C++ APIs are distributed as part of the source distribution or also directly from the subversion repository at https://pbtech-vc.med.cornell.edu/public/viewvc/icb/trunk/goby/cpp/.

The current version of the C/C++ APIs depends on Protobuf 2.4.1. We recommend using a patched version of Protobuf 2.4.1. You can download just our patch or our pre-patched version.

Python API

The Python API for reading binary data files created with the Goby next-gen data management framework is available as part of the source distribution and also at http://pypi.python.org/pypi/goby/.

Release Archive

• Previous Releases – Past releases for reference purposes. See the Change Log for differences between releases.

Follow Goby development

• View the latest Change Log.
• Browse the latest Java API documentation
• Browse the latest Python API documentation
• Mantis Bug Tracker, to report bugs or check on fixes (alternatively, post to the forum).
• Browse the SVN repository. (NOTE: Use username “guest” and your email address at the login prompt if you do not have an account with the ICB.)

• Check it out using subversion:

  svn co https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby

  (NOTE: Use username “guest” and your email address at the login prompt if you do not have an account with the ICB.)

Goby framework user forum

• View/Search the Goby framework forum (hosted as a Google Forum).
• Only members of the forum can post messages (this helps cut down on spam).