This mode is used to convert a FASTA input file to a random access cache. It is implemented by edu.cornell.med.icb.goby.modes.BuildSequenceCacheMode.java.

Mode Parameters

The following options are available in this mode

FlagArgumentsRequiredDescription
(-b|--basename)basenameyesThe cache basename. The basename will be used to construct the filenames for the cache file constituents.
n/ainputyesThe fasta or compact file to convert.