This mode is used to calculate statistics for quality scores in a compact reads file. It is implemented by edu.cornell.med.icb.goby.modes.ReadQualityStatsMode.java.

Mode Parameters

The following options are available in this mode

FlagArgumentsRequiredDescription
(-o|--output)outputnoThe quality statistics in tab delimited format.
n/ainputyesThe compact reads file to read as input.
(-f|--format)formatnoFormat of the output file (tsv).