This mode is used to calculate statistics for quality scores in a compact reads file. It is implemented by edu.cornell.med.icb.goby.modes.ReadQualityStatsMode.java.
Mode Parameters
The following options are available in this mode
| Flag | Arguments | Required | Description |
|---|---|---|---|
(-o|--output) | output | no | The quality statistics in tab delimited format. |
n/a | input | yes | The compact reads file to read as input. |
(-f|--format) | format | no | Format of the output file (tsv). |
Leave a Comment