This mode converts read sets to text format. It is implemented by edu.cornell.med.icb.goby.modes.ReadSetToTextMode.java.

Mode Parameters

The following options are available in this mode

FlagArgumentsRequiredDescription
(-o|--output)outputnoThe alignments in text format
n/ainputyesThe compact alignment file to read as input.
(-f|--format)formatnoFormat of the output file (plain).
(-s|--suffix)suffixnoRead set suffix.