This mode suggests how to slice an alignment by position to yield roughly equally sized slices. It is implemented by
edu.cornell.med.icb.goby.modes.SuggestPositionSlicesMode.java. Since Goby 1.9.
Mode Parameters
The following options are available in this mode
| Flag | Arguments | Required | Description |
|---|---|---|---|
n/a | input | yes | The alignment basenames for which slices are needed. |
(-o|--output) | output | yes | The file where slices definitions will be written (tab delimited, ref-index\tposition\tref-index,position). |
(-n|--number-of-slices) | number-of-slices | no | The number of slices to produce. Default value: 10 |
--modulo | modulo | no | Modulo for slicing positions. Large numbers require less memory and result in coarser, potentially less balanced slices. Default value: 1000000 |
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