GobyWeb is a web site to aid with next-gen data analysis. In the back-end, it uses the Goby framework, an open source next-gen data analysis framework along with a cluster of servers to provide rapid alignment and the tools necessary to enable the user to analyze their next-gen sequencing data.

Here are detailed tutorials that explain how to perform different analyses using GobyWeb:

Uploading a Sample

Alignment

Packaging Alignments for Download

Differential Expression Analysis