We are offering training sessions for NextflowWorkbench. In this short training session, you will learn how to create a workflow that:
- Download read files from the Short Read Archive (SRA)
- Estimate quality control measurements (with FastQC)
- Estimate counts against the human transcriptome (with Kallisto and an Ensembl Transcript sequence database)
- Combine these counts into one matrix, a pre-requisite to using these counts for differential expression (e.g., with the MetaR Limma Voom analysis protocol)
Here is a diagram of the pipeline that we will develop during the training:
Registration is mandatory to attend the training. The first session will be given Feb 2 2016 and future sessions offered monthly. See the registration form for dates.