We are offering training sessions for NextflowWorkbench. In this short training session, you will learn how to create a workflow that:

  1. Download read files from the Short Read Archive (SRA)
  2. Estimate quality control measurements (with FastQC)
  3. Estimate counts against the human transcriptome (with Kallisto and an Ensembl Transcript sequence database)
  4. Combine these counts into one matrix, a pre-requisite to using these counts for differential expression (e.g., with the MetaR Limma Voom analysis protocol)

Here is a diagram of the pipeline that we will develop during the training:

Training Workflow overview

Registration is mandatory to attend the training. The first session will be given Feb 2 2016 and future sessions offered monthly. See the registration form for dates.